We're a little crazy, about science!

Archive for August, 2021

Sometimes it rains

Brains are wild. I mean we have this misshapen jello blob stuck in our head and it somehow gives us the ability to be aware. We exist and think, feel, reason, all the stuff that makes us who we are. Brains are great, except when they aren’t. Depression is a horrible thing, which lives in the brain. You can’t “just be happy” anymore than someone could just be rich. Obviously when you live with chronic depression you got a dud of a brain. It may have to do with genetics, environmental factors, the way we were raised, or maybe it’s just horrible luck, but out of all the organs we can fix or replace, the brain is not one of them. You’re stuck as you and sometimes that sucks.

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A game of cat and mouse

pov: you’re trying to do some work and your cat is not happy with your progress.

Cats, you bring them into your home and suddenly you’re the guest. I can’t complain my two furry monsters always want my attention and it can’t hurt to be wanted, but it definitely and almost exclusively happens at the worst possible times ever. Namely when I’m in the middle of doing work on my computer. So I’ve gotten into the habit of taking a photo or two of them when it happens. Only on occasion, only when they are being particularly obnoxious, but after looking back I’ve got quite the collection of photos. I figure I would share the wealth.

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The voracity for exploration

Humans have set foot on the moon, multiple times in fact. We didn’t go once, we went six different times. Six times. That feels both like an incredibly large number and an incredibly tiny number all at the same time. For you and me it probably doesn’t feel like anything special, but for the people who’ve done it, they KNOW it was life altering. They told us so and it’s a shame that in my lifetime I will probably never set foot on another planet and have the chance to feel so… insignificant.

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Controlled chaos

Life has been pretty messy lately. Not just because of the pandemic, but that is definitely not helping anything right now. I’ve got papers due, I’m making a job change, and the wildest part is that my Co-PI may be leaving so I’m not even sure the job I’m changing to will still be there after the end of the year. That doesn’t include the outside factors, car issues, home issues, health issues. Those are all there too, but mostly right now I’m concerned about work related stuff and I realized that for the past few months it’s just been controlled chaos.

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COVID Vaccine: The third shot update!

It’s been over 36 hours since my third dose of COVID vaccine. For those who don’t know, I was designated as a vulnerable population and the veterans administration (VA) is apparently giving out the third dose to us now and to the general veteran population in the next month or two. Since I was one of the first getting my last two doses, I thought it would be wise to chronicle my experience.

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COVID Vaccine: The third shot!

It’s official, I got my third COVID vaccine shot. With delta ramping up and the long-term effectiveness of the vaccine being questioned there has been a push for a third shot. mRNA vaccines had the promise of being easily adaptable to new strains, it’s why we’ve been doing research on them since the mid-60’s, so it would’ve been prudent to adjust the vaccine to compensate for the new pervasive strain. Alas! It was not meant to be, at least not yet. It’s a little frustrating, but I am hopeful new variants of the vaccine will be forthcoming. So why did I get the shot?

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Education in a pandemic

Well the term is officially underway and with it comes in person classes! Because if there’s one thing a life is worth, it’s money and there’s money to be made by forcing you into the classroom. Yes the world has changed and we adapted with it, somewhat, but even with hospitals on the verge of collapse (again) we’re given the unequivocal message, “We’re going back to normal!” from schools. There’s nothing normal about it, but the economy is built on the backs of the people, so I guess, in a way, we are returning to normal.

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Multi-paper madness!

HELLLP! I’m doing way too much writing and it’s the scientific kind, which is to say soul sucking! Okay, it’s not that bad, but for the past month it’s been a mad rush to get several different papers written. Today I plan to go over all the papers I’m working on, the progress I’ve made, and why I really hope I’ll never have this happen again. Far too much writing! It has to end eventually though, right?

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The end of summer

It’s officially the start of the new school year. I’ve got a lot of anxiety headed into this year, but not for me, for everyone else. This year will be the first year that I’m completely finished with my degree requirements, now I just need to do my research so there’s no real need for me to be inside a packed classroom with others who may or may not be wearing masks or are vaccinated. So instead of being super depressing, let’s look at some of the highlights from this summer and what is just around the corner.

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Another book chapter update

I haven’t talked about it much since there’s a lot of other things going on in life at the moment, but about a year ago I said I was picked to author a book chapter about my life basically (here). I’m really excited to tell my story in a cohesive and professionally edited way. I tell my stories here for sure, but this is more polished and better worded. While my blog writings are in the style of a written stream of consciousness (basically, I hardly edit what I write) this will have had several revisions.

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A small job update

It’s not a straight line to the finish, that’s for sure.

A week ago almost exactly I did something incredibly stupid. Okay, I did it because I really want it, but there’s a chance it could blow up in my face, I’m going into research full-time to help pay for my PhD. Now, I’m not paying for my PhD, that is never a good option. Instead the hospital I will be working at will be paying for my PhD now and I will get paid better while I wrap up the last two years or so of my degree (more here).

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Analysis fails

I’m an idiot. So for the past few weeks I’ve been working with our super fun new dataset! Like a big kid, I did the statistics, made the checks to ensure that the assumptions held, then got my result. Everything was going well until I realized there was a typo (here) in my code. Well it turns out that wasn’t my only problem, but everything should be fixed now… should.

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A new school year

Well today marks the start of year three for the 365 days of academia project! It also means I’m now a fourth year PhD candidate. Since we’re going into another year I think today I’ll revisit why I started this project in the first place and basically just give everyone a reminder about what keeps me going. That way I can talk about all the anxious feelings I have heading into the new year and how I feel like I’m nowhere near where I should be.

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The promise of tomorrow

We’ve reached the end of the 365 days of academia project, year two! Last year I wrote in depth about my past and in particular my suicide attempt (here). At the time it felt like a good way to wrap up an entire year of basically pouring my heart and soul into this blog. Writing every day for a full year, I didn’t think I would do it and now I’ve done it two years in a row (minus when I was trying not to freeze to death!). Since last year we looked back, today we’ll talk about why I’m alive. The short answer is in the title of this post, the promise of tomorrow, but I think I can explain better.

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A look back

What a journey, two years ago exactly I decided to start what I called the 365 days of academia project. It was an ambitious goal to blog, every. single. day. for a full year. Then in what felt like no time at all the year was over. Having a daily chronicle of my thoughts and knowledge is just as much for me as it is for all of you. It’s nice building a little archive of my journey and tomorrow will be the official end of year two. A year feels like a lot of time, until you hit the end of it. Like they say, the hardest part of any journey is the first step. Well, we made it to the end of yet another chapter, so let’s talk about it.

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The stress of change

When I think of change, I think of fall. Maybe it’s an apt time for a change in my life then.

I’m used to things changing. In fact, when things are static it’s actually slightly scary because I never had a stable life growing up. Things were always in flux, from what state I lived in to what school I went to, every few years it was time for a huge change. But things are different now and I prefer consistency, I try to live a structured life. Even if the only reason I do is to keep things simple because I feel like I’m constantly rushing around trying to get stuff done for my degree.

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A funeral is for the living

The steady climb of the death toll from the pandemic is once again ramping back up as more people are exhausted from living like… well like we are living in a pandemic. Misinformation and outright lies are being passed around as truth. What’s worse is the people arguing that COVID is not an issue treat the incredibly high and incredibly senseless amount of death that is a direct result of callous disregard for others as an acceptable price for the right to be selfish. I saw enough senseless death in the military to want to be the direct cause of more. But maybe that’s just me.

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You still need to wear the damn mask

I know, it’s been a long pandemic. I’m tired, your tired, so, so many people are dead. It’s a lot, hell it’s a plot of dozens of horror movies, but it’s not over. So once again I am begging my lovely readers to wear the damned mask. I know there is a lot of confusing information out there. Some of it says don’t bother with the mask, some tells you wear one if you’re not vaccinated, it feels mixed signals sure sure. Well let me make it incredibly simple, wear the damn mask. You put on pants when you go outside, wear the damn mask.

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A leap of faith

Well I did something today that I will not be able to undo. Since I have a policy of honesty with this blog, I will admit that I’m scared. I don’t like taking risks, but I didn’t have a choice so now I’m going through the grieving process wondering if I’ve made the right call and how quickly I will end up regretting it. I had a choice, I made a choice, and now we wait. It’s a leap of faith, one I’m not sure I am ready to take.

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The R21 Result

Well I’ve been meaning to write this for a bit now, but the R21 I helped write back at the beginning of the year was not funded. It was a longshot and my Co-PI who helped write and submit the proposal was not surprised as to the result. Worse, it was not discussed. Since I’ve spent the past year learning the hard way how grant writing works, I figure today I can pass on that knowledge and we can who knows, maybe it will help others who are grant writing.

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Countdown to the grant submission

We’re just days away from the deadline for the grant I’m writing. We’ve got an awesome team of people that have agreed to be a part of this project and the funding will go towards the big idea I had several years back (what I’m calling my “super secret technique”) so I’m excited! My main-PI thinks the proposal has a good chance of being funded and I trust his judgement since he’s been doing this for a long time. So today I figure I can brag about the team and what will happen in the next few days.

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An unfortunate typoo

Yes, the title was on purpose. No, I’m not thrilled at the moment. Sometimes you just need things to go smoothly, but life has other plans and yesterday I hit one hell of a stumbling block. The good news is I’ve caught it, but the bad news is there is now about 104833423x more work for me to do to fix the issue. No matter how careful you are, something is always going to get missed, yesterday was just a reminder that you can miss things even when you’re paying close attention. I may go as far as to say, especially when you’re paying close attention.

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Why is it always a rush?

Well my latest grant is due at the end of the week, so I am now just a few short days away from the deadline and rushing to meet it. There has been plenty of time between when the proposal for funding went out and now, so why does it always feel like things are last minute? It probably has to do with the iterative approach to writing and the edits that go on forever. Since I need a break from scientific writing I figure now would be a good time to talk about the process and why a far off deadline is never enough.

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The other funding options

I think I would describe my life as controlled chaos. It’s a delicate balancing act of stuff I need to do, mental health, physical health, and just my horrible luck in general. For the past few years my level of panic has been steadily increasing as the end of my funding was getting closer and closer. Try as I might, I have had no luck getting further funding for my PhD and in less than four weeks that dreaded deadline will be here. Which for those who are not students, means I will not be getting paid, my school will not be paid for, and the house of cards I’ve built will come crashing down around me. But there’s still some hope…

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Yet another grant…

The search for funding continues! We’re less than a week away before I need to submit my latest attempt at securing funding for my PhD to the end of my degree. Right now we’re running out of time and in just a few weeks I could be without pay, without tuition reimbursement, and basically on the verge of being homeless again… my how the tides turn. Not to fear though, I’m not doing this alone and I have options. Today we’re going to talk about the grant I’m writing, why it won’t help my current situation, and why I’m still going to do it.

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The final day of summer internship

Today marks the last day of the summer internship for our early career undergrad researchers. On paper, it’s been a long, sometimes bumpy road that wasn’t always the easiest thing to work through. In reality, it was all too short and it feels like we just got to know our interns and now it’s time to say goodbye. Through the experience I’ve got to watch the intern I was mentoring grow as a person, and grow more confident in herself. It’s been a privilege that I got to be a part of this.

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A small celebration

Salted caramel apple empanadas covered in cinnamon and brown sugar, the result of my labor of love (and frustration)

It’s my Co-PI’s birthday and to celebrate I’ve been busy. The rest of the lab took care of getting a cake and hanging the decorations. Since I split my time between two labs at the moment, I wasn’t around to help and I felt slightly guilty about it. I like my Co-PI and even though he’s (probably) leaving soon I at least wanted to do something nice for him. So in spite of all the work I had to do I got to baking.

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A surprising request

Basically the same face I made when he asked…

Well yesterday was unexpected. I got a phone call from someone I wasn’t expecting to ever hear from again. My former classmate who I wrote the journal paper we just finished reviewing and resubmitting. It was unexpected because after we submitted it the first time he sort of dropped off from contact (despite the back and fourths with the other people on the paper). He was asking for a reference for a research position and I said I would do it, but I was a little surprised given our history.

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So you want to email a PI

It’s that time of the year again, people are gearing up to apply for graduate school and with it a flurry of things to get done. Graduate school isn’t for everyone, but if you’re planning on making the jump, now is the time to lock in the schools you want to attend. More important than the school is the lab you want to work, you have looked into the labs at your dream school… right? Finding a good PI (primary investigator or the boss of the lab) is, in my opinion, even more important than getting into that dream school of yours. So buckle up and we’re going to talk about how we find the perfect lab.

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The end of summer internship

Well today wasn’t the official day, but we had our first presentations for the summer internship program. Friday will be the last day for the interns and we will bid them farewell and good luck with whatever they do in life. The presentations today were meant to be fun and just a way to celebrate everything the interns learned while they were with us. We got to see work done in all the labs and the experiences were varied, so that made for an interesting time. Basically summer is near the end and it’s a little hard to process to be honest.

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The hunt for knowledge

Sometimes science is like digital archeology. Thanks to the internet I have the sum of our collective knowledge at the tips of my fingers. I just need to ask the right question and I can find the answer. Unfortunately, the right question isn’t always the question you come up with. The right question may not be worded the exact way you think it should. The right question may not even be the right question at all, it’s just the first in a long list of questions you need to work through. In a digital world, we’re still stuck looking for ways to get the answers to questions the system may not understand. I’m on a hunt and so far I’ve been fairly lucky.

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