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Posts tagged “daily blogging

A mental health day

Let’s face it, it’s been a busy…. life. This week has been the longest month for me and we’re doing it all again next week, so I need a minute. Mostly my brain is tired and since it needs to do a lot of work tomorrow I want to give it the day off and just relax. So once again I’m reminding, mostly myself, that it’s okay to do that from time to time. My goal has been to write something daily while doing my PhD and while this arguably sort of counts, even if I wrote nothing (like what happened recently), it’s a good reminder that not doing something doesn’t set you back to zero. So for today I’m taking a little break for myself. Heck, depending on how tomorrow goes, don’t be surprised if I take the day for myself too.

Over the years I’ve learned that mental health is a balancing act, don’t mind me while I shift the balance a little.


The dreaded dissertation timeline

Things are slowly moving forward. I’ve got an IRB approval, I’ve got a proposal mostly written, and I’ve passed along the needed equipment list to school-PI for purchase. Once I finish my proposal modifications, I should be ready to start scheduling my proposal defense. At which point, I should have the greenlight to collect my data and, in a perfect world, graduate soon! But…


New year, same luck

I don’t want to think that I’m unlucky, but sometimes things just keep happening and you have to wonder if somewhere in a past life I broke dozens of mirrors or walked under a few hundred ladders. Who knows? What I do know is that luck has not been kind. Things tend to break around me and while I don’t know the rate at which I should be expecting things to break, the current rate feels incredibly high.


2021 in review

Last year I did “a year in review” and yesterday, feeling a bit curious on seeing what I had accomplished the year before last (2020), I went back and read it. Obviously the last year has been… interesting to say the least. We’ve collectively been through some shit, but that doesn’t mean nothing good happened so for a moment at least I want to catalog some of the good stuff that happened last year. So next year, I can do the same look back and see what my goals were and what was actually accomplished.


A marathon of cooking

How it all started… (remember cut veggies/fruit before meats to avoid cross contamination and ideally use separate cutting boards)

Well it’s been an interesting few days. Since I don’t get to have a traditional holiday experience (due to COVID), like most people I know, I opted to make enough food to feed a small army so I could share some with basically everyone in a safer manner than having one big celebration. Over the past two days I’ve spent a total of 18 hours in the kitchen, but who’s counting? Me, I’m counting.


‘Tis the season!

Well I wish I could say that today is a regularly scheduled day of relaxing. In a way it kind of is? Today is my regularly scheduled prep for tomorrow’s dinner. Now I don’t have a traditional family, but I do have friends and what not, so I’m making a rather large meal. The plan (as it is every year) is to have plenty of leftovers for myself, but also to have enough to hand out to friends and coworkers when Monday rolls around.


The year I met Alice

Not quite that Alice, but I definitely felt mad afterward.

Every year around this time I think of Alice (not her real name). Alice and I have a lot in common. We have the same last name, same initials, and we had no idea the other existed until one day when I randomly checked my email and discovered a serious case of mistaken identity. That was my introduction to Alice, so every year I think about her and wonder how she’s doing. But my dear reader, the story isn’t about the emails. The story is about what happened next.


OR experiments, the aftermath

The good news is we have data! Lots of data, more data than you could shake a stick at, although I don’t know why you would shake a stick at anything… That’s beside the point(ed stick) though! Yesterday was not one, but two OR experiments and I have to say surgeon-PI must be in way better shape than he appears because both hospital-PI and I are exhausted!


The BIG result

Art by: Rebecca Wright

Today I had my meeting with school-PI and I have to say it went both better and worse than I was hoping for. The good news is I’m still a member of his lab and he seemed surprisingly okay with me switching projects for my dissertation, not that the project would change much, just the funding source. Of course that doesn’t mean it was all sunshine and rainbows, because that would be too easy.


The tough conversations

One of the things I left (intentionally) off my to-do list for the week post was the talk with school-PI about hospital-PI. The plan is to arrange the meeting sometime either this week or next depending on school-PI’s availability to have the talk. I’m not thrilled about it and I don’t know how this will turn out, but it has to happen and it has to happen soon.


Thanksgiving 2021

Well it’s thanksgiving. As usual for anyone who’s picked up a history book, celebrating thanksgiving is one hell of a choice. Granted it was made generations ago so we do it out of habit and I am happy to have the extra time off, although time off as a student is more of a concept and not an actual thing. Point being, celebrating genocide is something we do here in the US. Because that’s how we were founded.


A bug’s life, a horror story

I’m fine. No, really everything is okay. There was a point where I thought it wouldn’t be. But I’m better now. Looking back on the events of the past week, I can see why someone looking from the outside may worry. Things have a way of unraveling so suddenly. But it’s okay because I found the cause and I fixed it. It’s what I do you see, I fix things. I’ve fixed myself more times than I can count, but they weren’t permanent fixes. I was shown a better way and now I am fine. Don’t worry you can hear my story, you can be fine too!


So you’ve had a septoplasty

Fine, I guess I should share some of my story since I share everything else and this would be useful to anyone else needing the same thing. Technically speaking what was done was a combination of surgeries, but I’m going out on a limb and thinking the good ol’ septoplasty is the one most people will be having and so that’s the topic of the day.


Surgical recovery, yet again!

Well today is officially day one of my recovery. Yesterday (here) I had my…. well it’s in the double digits that’s for sure, surgery. I was spoiled this year as I only had a single surgery, normally I go in once every six months for something and I’ve had that routine for the last six or so years, so yeah double digit surgery count, but I don’t remember the exact number, I think it’s 13 (spooky!) in any case I lived, despite the VA hospitals best efforts.


If you’re reading this, it’s already too late.

How’s that for a spooky title? Normally I write my posts the same day you all get to read them. It’s a nice system that keeps me just stressed enough to keep going. I’m only semi-joking. This post however was written yesterday, or today for me. The reason is simple, if you’re reading this then I’ve already been whisked off to surgery again. Not that this wasn’t a planned thing, but I didn’t want to make a big fuss about it since I have two surgeries every year as it stands. This year it’s just one so I hold out hope that means the six month shuffle of something new being painful/swollen/etc. is slowly coming to an end.


The digital disconnect

Some themes just resonate with people because they are universally felt. Feeling like you don’t belong in your own skin isn’t something new. Movies tap into things like this a lot, the Matrix for example gave a sci-fi spin to the feeling. One where you could simply unplug, wake up, reality wasn’t amazing, but it was reality. I think a lot about the handful of suicides that followed the movie, people thought it was a message, a call to action so to speak.


The death of hope

Maybe I’m being over dramatic, who knows. It’s been a struggle and yes, today is not a good day. Not that many days around this time of the year are good, but today in particular is a bad one. Depression sucks and the thing about depression is that it’s hard to explain to others, especially if you’ve never had to deal with clinical depression or if you’re like me, had to live with chronic treatment resistant depression.


Madness on the ship of Theseus

Awhile back I made a quick comment on the ship of Theseus problem and left it at that. I guess it’s been rattling around in my head since then because we’re revisiting it. Everything in my life feels like it’s falling apart and for the past month or so I’ve been desperately trying to hold onto any bit of flotsam that I can find. Once again, I’m left to pick up the pieces, try to rebuild, and move on. But if there’s nothing left of the old life, am I still the same person?


Day two, the computer teardown

Talk about spoilers! This is where we are at this moment.

Well it’s day two of the big computer watercooling loop install and I’m already running into several problems. Some of them can be fixed quickly, while others… let’s just say I needed to get different parts so I’m in the process of doing that. As promised, there are tons of photos and explanations of everything I’ve done so far and why this is turning into a headache. Sometimes doing a custom job means getting extra custom.


Falling up

Things are still falling apart in my life. My mental health has tanked, and while life never had the shine it should, it looks especially dull at the moment. In short, my world has been steadily unraveling and will probably continue to do so for some time. As painful as all that is the most disorenting thing about my life has been falling up, and it’s happened again.


The monsters were never under the bed

It’s funny that as children we all have the same strange fears. There’s monsters under the bed, in the closet, hell the feeling that something will take our foot off in the night is so universal there’s comics making fun of will happen if you leave a foot outside of the sheets. Parents happily reassure our childish beliefs, because it’s true, there are no monsters under the bed. What they don’t tell you is the monsters are real, they just live in your head.


There’s no such thing as solid ground

I am a private person. Is it then ironic that I blog about my journey? The ups and downs of getting a PhD, the trials and things life throws at me, the interplay of choices I’ve made and their effects decades later. It’s the ship of theseus paradox, how much of me is still me after all the bits and pieces that have been shaved off over the years and replaced. If there’s no one around to see me change, was change even made?


A small job update

It’s not a straight line to the finish, that’s for sure.

A week ago almost exactly I did something incredibly stupid. Okay, I did it because I really want it, but there’s a chance it could blow up in my face, I’m going into research full-time to help pay for my PhD. Now, I’m not paying for my PhD, that is never a good option. Instead the hospital I will be working at will be paying for my PhD now and I will get paid better while I wrap up the last two years or so of my degree (more here).


A look back

What a journey, two years ago exactly I decided to start what I called the 365 days of academia project. It was an ambitious goal to blog, every. single. day. for a full year. Then in what felt like no time at all the year was over. Having a daily chronicle of my thoughts and knowledge is just as much for me as it is for all of you. It’s nice building a little archive of my journey and tomorrow will be the official end of year two. A year feels like a lot of time, until you hit the end of it. Like they say, the hardest part of any journey is the first step. Well, we made it to the end of yet another chapter, so let’s talk about it.


A small celebration

Salted caramel apple empanadas covered in cinnamon and brown sugar, the result of my labor of love (and frustration)

It’s my Co-PI’s birthday and to celebrate I’ve been busy. The rest of the lab took care of getting a cake and hanging the decorations. Since I split my time between two labs at the moment, I wasn’t around to help and I felt slightly guilty about it. I like my Co-PI and even though he’s (probably) leaving soon I at least wanted to do something nice for him. So in spite of all the work I had to do I got to baking.


A surprising request

Basically the same face I made when he asked…

Well yesterday was unexpected. I got a phone call from someone I wasn’t expecting to ever hear from again. My former classmate who I wrote the journal paper we just finished reviewing and resubmitting. It was unexpected because after we submitted it the first time he sort of dropped off from contact (despite the back and fourths with the other people on the paper). He was asking for a reference for a research position and I said I would do it, but I was a little surprised given our history.


The long goodbye

It’s not official, but it kind of is… my Co-PI and I will be parting ways unfortunately. On one hand I’m happy for him, he’s found a better opportunity to help him grow and progress his career. We don’t do research for the money, but we do it for the adventure. We do it for the help we can give people. We do it for the discoveries and friends we make along the way. He has a chance to grow and it looks like he’s taking it. We worked together for over two years now and I didn’t expect it to be coming to a close anytime soon, but plans change and I need to change with it.


A five dimensional pain

This is what it’s like working in higher dimensions. Oh is it moving? It shouldn’t be, this is a still image. Welcome to the mountain of madness!

We’re back and this time working in five dimensions! But wait, we’re not done, we’re going higher and I’m not thrilled about this at all. Working in higher dimensions is a pain especially when we’re stuck in a three dimensional world. So what am I doing in a five dimensional space? Well besides pulling my hair out, I’ve been trying to do some not so basic math to find some significance, in life, but mostly in my data.


Sometimes the progress is slow

Today has been incredibly busy, but incredibly frustrating. So far next to nothing has been accomplished towards the work I have to do, but I did help a few people out and we discovered some interesting issues with some software the lab uses. Okay not issues exactly, it just doesn’t work the way we thought it did. In any case, there has been a lot of running around and doing things, just nothing productive for myself. Some days are like that though, hopefully I will have better luck tomorrow or maybe even later tonight.


I’m teaching solid modeling, again.

The lightbulb from my last lectures, you can make one too (here)!

Well I got a surprise email from my main-PI yesterday reminding me that I was teaching two classes this week. I knew it was coming, the surprise was that the summer courses are still going on, I haven’t gotten a single email about them since I taught my intro to MATLAB class. Normally when I teach I put all the information out there on the web for all of you to use it how you see fit. This class isn’t going to be that way, but there’s a good reason for it.


The big brick wall

Art by the incredibly talented Lora Zombie (who will never read this, but her art really helped me)

No one likes to think about dying. Death is one of those things that is taboo because we’re alive and don’t need to worry about that sort of thing right now. There’s too much to live for to worry about death, so we tend to ignore the big brick wall we’re headed right for. No one lives forever and frankly I’m not sure that I would want to even if I could, but I can’t help but think about what happens when I get closer to that wall and what life will look like before the day I hit it.


Working in higher dimensions

Imagine if you will, only being able to move along a straight line. You’re now in one dimensional space. But wait! What if we are allowed, quite literally, to take a left. You are now allowed to move along a square space, this is two dimensional space. We can do better, though. You suddenly can move up and down, traveling in an area that’s the shape of a cube! You’re now in 3D space. Then suddenly you disappear from view, but where did you go? Welcome to the fourth dimension, you can’t see it, you can’t imagine it, but we can do math here and above!


Depression, a tale of hunger

Let’s pretend you have a pet that is constantly hungry. You can’t leave the house, you can’t sleep, you can’t even take a shower because anytime you want to do something for yourself this monster of a pet just won’t allow it to happen. It’s hungry. It wants to be fed and it wants to be fed NOW. Oh you’re exhausted, feed it. You want to do something for yourself? Too bad, feed it. It’s all consuming, it never sleeps, it never is satisfied, and you cannot get rid of it. Chronic depression is the pet you never asked for that demands your attention all day, every day.


On saying “thank you”

The day to day pleasantries, I’m sure we go through the motions on a regular basis, please, thank you, it’s pretty engrained into most of us. At least I would hope, broad statements like that always have exceptions, but more often than not I would like to believe that the majority of people are decent enough to say thank you to someone who is doing something for them, even if it’s just their job. Sometimes simply saying thank you can have a huge impact to a person, even if you don’t expect it to.


Journal club

Okay, get this I completely skipped over the fact that my Co-PI started a “journal club” for our little lab. I say little because for the longest time it was just the two of us and the research coordinator (who is amazing by the way!), but now we have not one, but two others in the lab. It’s nice not having to do a lot of extra work, but different topic for another time. We formed a journal club a short 8 weeks ago and every other week one of us sends out a research paper they find interesting about a week prior to our biweekly meetings and then that person presents on it. This week it’s my turn and of course, the universe is against me.


On the ambiguity of email

As per the usual around here I’ve been swamped with things to do. Between classwork, experiments, data processing, and writing, its been a lot. It may sound like I’m repeating myself at this point, but stuff just keeps coming up and I prefer talking about it instead of just keeping it all bottled up. More to the point, it means I have new things to do and I like to talk them out here so I have a clear(er) path moving forward. What does this have to do with email and the title of today’s post? Well, let’s talk about that.


Not so alone

Of all the odd twists and random occurrences that have happened in my life, I think yesterday was probably in the top ten, if not top five in my most unexpected events list. For those who don’t follow me on Twitter (you totally should FYI), I’ll explain and if you already know what I’m talking about then maybe just skip to the middle/end of the post because that would be for you specifically.


Another week in review

A week ago exactly I gave a review of the week I had and a look at the week coming up. I thought it was so much fun I’m doing it again, because that’s what passes for fun around here. Who knows maybe I’ll do this regularly! Basically a lot has happened this week and now is a good time to catch everyone up on some of the oddball things I’ve done and things I may have missed in favor of freaking out about the work I’m doing. So let’s just jump into my semi-traditional introduction, then we can look back and ahead. It’s fun for everyone!


The homework rush

Not the most exciting of topics, especially after yesterdays news that I’m giving a presentation at the BRAIN conference, but my homework is due tomorrow. This will be the first time this term that I haven’t finished it early. Normally I will have turned it in days in advance to get it off my plate, but there’s so much going on that I’m not even certain that I will have the chance to finish it. What do I do in that situation? Well keep calm and carry on… I’m not British, but I think that’s how the phrase goes.


I’m giving a talk!

Well I slipped through the cracks yet again! It hurts me to admit that I’ve probably earned this one. The 7th annual BRAIN initiative investigators meeting is coming (in June) and I was selected for a Trainee Highlight Award. Is it a big deal? Probably not, but I’ll take a win when I can get it. Today we’re going to dive into what exactly this means for me and why even little victories should be celebrated. Is it a little victory? I mean they did pick me, so what does that say about them?


Everything went better than expected!

So yesterday I had my hands full with a bunch of work to do, no motivation what so ever to do it, and a deadline that was today. I didn’t want to burn myself out, especially since I still have a homework assignment due this weekend and yet another round of tasks set out before me, this time before the next week so that’s… umm terrifying. Let’s just dive into what happened today during my meeting.


When the exhaustion hits

Woke up this morning feeling less than stellar. This happens pretty regularly when I push myself for long periods of time. It’s not ideal, since I still have a bunch of stuff to do, but thankfully after living with my limits for so long I have a few back up strategies to help me get through it all. Ideally the school would offer accommodations to people like me, but to get them there is a lot of hoop jumping, enough that it doesn’t make it worth the effort. I suspect that’s the point.


New computer issues…

I took this photo right when I got the new laptop.

Well if I’m not a magnet for computer issues I don’t know who is. If it’s not one computer it’s the other. In this case, I had problems a while back with my desktop (here) where the watercooler went bad and my CPU decided it wanted to scream at me anytime I ran the computer, like just turned it on, not doing anything with it. This time it’s my laptop that I’m having trouble with and unlike my desktop, the laptop is my daily use computer so I’m not too happy.


A week in review

I figure it’s a good time for the recap of the week. I mean there was a lot going on and while I want to spend some more time on my “in statistics” series, I also really need a break. So instead of spending a lot of time making sure the information I’m presenting is accurate, concise(ish), and (with luck) well thought out, I figure it would be easier to talk about the things I’ve had to do this week and the things I get to look forward to! Joy, welcome to life as a PhD candidate.


The lonely cultist

Listen closely as I am going to divulge a secret from the universe. It will be so earth shattering that you will forever remember this movement. There will be an irrevocable before and after. It has taken me decades to uncover this secret and as the sole owner and guardian of it, I am trusting part of it to you. You can be a part of something larger than yourself, find secret truths, and if you are ready to receive them, find your own. There are secrets in this life hidden just beyond human sight and they are waiting for you to find them. They are calling out to you in the wind. Do you hear them? Are you ready?


Caution: under pressure

For a third week in a row I’ve been instructed by my main-PI to give our lab virtual presentations on the work I’ve been doing. It’s been a point of stress now for almost a full month and doesn’t seem to be letting up any time soon. After every meeting I get a list of things I need to do before the following meeting and this time was no different, so today I guess we’re going to take a look at what exactly is next on my to-do list.


The long data processing road

Okay I’m taking another break from the “in statistics” posts, at least for today since the next topic is going to be a long multi-day post worth of stuff and I need an easier post for today. I have way too much stuff going on at the moment to organize a long post! In any case, I figure I could give an update to the data I’ve been working with and how that whole mess is going. It’s mind numbing and exhausting work, but not in the way you would think.


EEG cleaning progress

Yesterday’s coding work went better than expected! That may or may not bode will for the rest of the week, but hey at least I’m sort of ahead of schedule. Today I figure we can take a quick look at what I’ve been doing with the data and why. This will be part informative and part me complaining about how everything has to be so damned hard (basically the usual around here). Mostly it will just be some visuals of the things I’ve had to change to get everything looking like my main-PI wants, he’s got a particular style he likes so a lot of large text, bolded labels, etc.


The juggling act

The middle colorful plot, it’s called a spectrogram and if you notice the colorbar to the right has values ranging up to 25,000, that’s not right…

Blogging and coding and writing, oh my! There’s a lot to get done, seems like a running theme around here doesn’t it? If it were possible to clear some of it off my plate it wouldn’t be so bad, but the sad truth is deadlines seem to like to group together and there are quite a few coming up. Most of them are for my class so I can’t really miss those even if I wanted to. My research deadlines I can’t really miss either, not without some consequences anyway. So we’re back to juggling everything, but as we’ve seen in the past, I’m pretty good at this.


The new to-do list

It’s been busy! So busy I was trying to find time to write while working on the million other things I have going on. Since I have a moment, I thought now would be as good a time as any to go over the big list my main-PI gave me to do before next week. It’s a long, long, long list and as you may expect, he’s pretty far removed from the situation, so I don’t think he realizes how difficult it is to do what he’s asking, but we’re doing any anyway! Thankfully I’ve gotten pretty good at coding, the bad side is that it’s not my code I’m working with, so that’s the start of my struggles.