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Posts tagged “dissertation

Dissertation data update 2

Yep, we’re still being lazy and just numbering the updates. Maybe I’ll come up with fancy titles, but for now, this works. Plus this makes it easier for me to search back later. So now that I’ve justified my laziness, let’s talk about where we are. We are here. Okay, seriously, currently I’m still in the pre-processing phase, but there’s good reasons for that. Today I may actually finish pre-processing and I’m hopeful I can hammer out at least a rough idea of what we have… maybe.

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Dissertation data update 1

I’m being lazy so we’re just going to number my updates with regards to the dissertation data I collected, because I’m tired and I can’t honestly think of a better way to do it at the moment. This is subject to change if I come up with a more creative way. So a while back I collected a bunch of data, then this weekend I had my first chance to teach the people who assisted the first steps to processing it. It turns out there’s a long way to go with them.

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Dissertation data processing

Today is the day! Well one of many days… wait let’s start over. Today we are processing data for my dissertation and by we I mean myself and two people who have been helping me in the school lab. They will be learning how to process the data, but I’ll be processing all my data solo. It’s my dissertation after all and the old saying, “if you want something done right…” applies here. I can’t afford to trust that they will do it correctly because they’ve never done it, but they are going to learn how today!

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Dissertation – The first aim

Okay, with my data firmly in hand (so to speak), I’m ready to start tackling my first aim. Despite having all my data collected however, I’m incredibly behind schedule, by about four months if I check my handy proposed timeline. So it’s a race to catch up if I want to graduate on time and oh do I want to graduate on time! Then there’s the other issue, I have the DARPA Risers conference coming so it would be nice to show something new, that’s only a few months away so the race is on…

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Success! 10 of 10 dissertation experiments

It has been a struggle and I really, really don’t want to ever have to do something like that again, but after a few short weeks (well what feels like short), I now have 10 out of 10 of the datasets needed for my first aim. Will there be an aim 2 data collection? Maybe, if what I’m proposing turns out to actually work. In any case, this is now done and I can focus on the next step.

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Success! 8 of 10 dissertation experiments

Well today was the day that would never end. I only had one experiment today, but it took the whole day. To be fair, we didn’t start until the afternoon, but it was well into the evening when we wrapped up and that was exhausting. Since it’s been such a long day, I’ll recap how things went. For everyone who’s interested, but also for myself since I hope this will help with my dissertation writing sooner or later.

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The last participants

Well I had other topics in mind for the day, but I’m so excited that I wanted to make a little post about it. I’ve finally confirmed the last three participants for my dissertation project. I have 7 out of 10 datasets collected and needed three more for this first aim. For the past few days I was nervous that I wasn’t going to get it done this week. Sometimes that happens, things don’t work out how you plan, but that isn’t the case! I’ve confirmed all three participants for my project.

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The helping hands

So granted it’s my blog, my journey, and basically all about me, so maybe I think too highly of myself. I’m trying to not read too much into the implications and what that says about me, but I’ve always thought of the blog as more of a tracker for myself than anyone else. Not that I’m not happy to have the company! Today though, I thought it would be nice to talk about why it takes a village to make a dissertation, despite what it may sound like sometimes.

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Success! 7 of 10 dissertation experiments

One more time. Well technically it’s two days, but whatever. Today marks the completion of 7 of the 10 dissertation experiments I need to get done! Wow, things are moving quick, but maybe not quick enough considering I still need, you know, process the data and make sense of it all. But that’s tomorrow’s problem and I don’t have to worry about that today. Let’s talk a bit about how today went though!

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The halfway point

It’s official! As of today I have 5 of 10 datasets collected for my dissertation. There’s still a lot of work going forward for sure, this is just the first step, but it’s a big one. Between the last two days I’ve performed three experiments and I’ve found a few other people to help with the next round. If all goes well, I’ll have all the data for the first aim collected in the next few weeks. So what now?

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The long road to the end of my dissertation

Sometimes you’re so focused on something that when you take a second and look up you realize it’s almost the end of the year and you’re wondering how the hell that happened. It feels like just yesterday summer had started, we had our interns at the hospital and I had just defended my dissertation proposal. Now we’re roughly 8 months to the dissertation defense deadline and there’s work to be done. But there may be more, depending on how things go.

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Success! 2 of 10 dissertation experiments

Well today went better than yesterday and yesterday went pretty good to being with, so I’ll take it. All in all there were some things that I needed to iron out and a few things I still need to figure out, but it was successful and that’s all that matters. Since yesterday I already went over the rough outline of how it went and doing that again would be redundant even for me, I figure we can talk about how even the best laid plans can change once you start experimenting.

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Success! 1 of 10 dissertation experiments

What a day… I’m so exhausted. It’s been such an overwhelming amount of work, but it’s over and that’s one of the ten experiments I need (for the first phase of my dissertation anyway) done. The data collection went smooth, I love the new equipment, and I only ran into what appears to be one problem with the recording, but I’m hoping it wasn’t a real issue. So quick recap of how it went and then I get to remind everyone, and myself, that I get to enjoy doing it all again tomorrow!

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Experimental preparations

Finally. I’ve got not one, but two dissertation experiments lined up one for tomorrow and one on saturday. It’s going to be a busy few days and there’s a lot of prep that needs to happen today and ostensibly tomorrow before and after the first experiment. Since I am in the habit of sharing my process, I figured it would be a good idea to talk about how we set up for experiments. I’ve spoken often about how long it takes, but I can’t find a recent example of going over what that actually entails. This will be… interesting.

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A successful first test

Sometimes you have to work weekends, especially if you end up working full-time. But sometimes you have to do what you need to do if you want to graduate on time. Hint, I really want to graduate on time, but then again time is relative. Grad school is time intensive and as I’ve talked about in the past, you have to do the work when you find the time and energy. Yesterday, I made time to test some new equipment and it went well!

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A small step towards graduation

Well the hurry up and wait phase is over. As of today I now have the equipment I need for my dissertation experiments so it should be full speed ahead with data collection. Now I could do data collection and analysis simultaneously, but I don’t think I want to do that since I’m in a hurry and I’ll explain why in a minute, but now that I have equipment we’ve made a small step toward finishing this project. There are some things still lingering, but I think we’re on the right track forward. The only question is, can I get it done in time to graduate in the spring?

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A wait off

See what I did there, again? Yesterday I lamented that I was waiting, and waiting, and waiting, but Godot never seemed to show up. Wait wrong story. But seriously, I have been waiting months for equipment so I could start my dissertation data collection. THE final thing. I can’t begin to put into words how frustrating this whole process is, I’m ready to do something, like now! I want to do it, the will is there, but the equipment isn’t. So what to do, but wait and wait some more, unless…

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The wait of it all

See what I did there? As we are now at the end of the month, I’m starting to stress, yet again, about my dissertation experiments. Because life isn’t stressful enough after the past few days, my brain has decided to focus on yet another thing outside my control. But as with everything my brain does, writing it out helps, which is why we’re going to talk about what I have left to get my degree and how I’m anxious to get started.

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The long wait

Soooo… my dissertation. Haven’t really talked about that in a bit. Yeah, things are off to a rocky start. In the spirit of being transparent and sharing all the struggles, I figure today we can discuss where I am in the process. That includes the hold ups, the let downs, and why I’m officially just a bit nervous that I’ll actually be able to meet my goal of graduating in the spring. It’s going to be a bumpy ride, but at least it’s temporary, he says as if he actually believed it.

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A dissertation dilemma

Okay, since I’m still waiting on my new and fancy toys to arrive for my dissertation I’ve been debating about going through the whole thing once again using the equipment I already have access to. Since there’s a limited amount of time I may just have to power through and go ahead with data collection using the old equipment, but it’s still anyone’s guess if I’ll do that because frankly I’m not sure it will be worth it. Since it’s up in the air, I figure I can write out my thought process and hopefully figure it out one way or the other.

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Challenges in data collection

It had to come sooner or later, I needed to finally take a look at some of the data I collected for my dissertation. The problems were many and the biggest issue is that I’ve never worked with the software we used to collect the data, so there were issues… lots of issues. So today let’s recap the problems I’ve faced and hopefully I the next time around this won’t be so damned painful.

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New equipment

Things are looking up! After last weeks attempt at collecting data for my PhD, I realized how important it would be for the new equipment I requested to be ordered and in my hands the next time I’m collecting data. Unfortunately there’s a process to getting new equipment and despite having funding for my project, there is no direct way to spend the money. Instead there is a winding path you need to follow in order to get equipment in a research lab.

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The first time is always the hardest

If something can go wrong, it will go wrong. Especially when it’s the first time. I’ve got my first dataset for my PhD dissertation, but it was a battle of wills and the technology made sure to let me know, it’s in charge here. But at the end of the day, I got what I wanted, so it’s a win, even if it’s a bit of a loss too. Frankly, I’m so exhausted right now so forgive me if this post is all over the place, well more than usual.

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Experiment prep

Tomorrow is my first experiment! To get ready I have a few loose ends to tie up before the big day. Mostly I just need to write everything out, make a list of items I need to set up, organize a few things, the stuff no one thinks about when they head off to an experiment. Tomorrow is going to be bumpy, but the first time always is, so best to be prepared.

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The first dissertation experiment

One of my favorite photos I took years ago of my labmate gelling a participant for an experiment. The syringe holds a conductive gel, the needle is blunt tip so it doesn’t hurt or puncture the skin. The gel bridges the air gap between the scalp and cap because hair gets in the way.

It had to happen eventually! But not today, this Friday however will mark the first of several experiments I will be undertaking in the (currently) slow march to my PhD. In an effort to help people understand that experiments aren’t just something that happens at the scheduled time, let’s take a look behind the scenes at what I need to do between now and Friday to get ready. It’s going to be a looong week.

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3 aims, 2 experiments, 1 year

It’s now official, I have a rough timeline for everything I want to do and I’ve got the greenlight from my committee that the work I propose to do will be enough to earn my PhD. I’ve spent the past day trying to plan out the rough outline of what the next year will look like in context with all the other work I will be doing and it will be busy!

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The last project

Today was my proposal defense day and I would like to say it went well. I would like to. Kidding, I think things went okay. I’ll leave that to the handful of people who read my blog regularly to judge. My committee members all thought the work was interesting and my plan of attack was good, so now the real work begins. It’s the last project before I get my PhD.

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The main event

Well tomorrow is D-day, proposal defense day that is. Technically there will be one more defense day after that, my actual PhD defense. The difference being, when that’s all done I’ll have a piece of paper to show for my efforts. That won’t come until next year… hopefully. But in the meantime, tomorrow is the (other) big day and I’m getting just a touch nervous! After all, it’s only the next year or so of my life I’m laying out for my committee members, what could go wrong?

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Seven days…

Okay, I’m not going to do a countdown to my proposal defense, as much as I really want to do it. But since we’re a week away from the big day, I wanted to give an update on the plan and maybe recap a little about where I am. Yes, it feels like a theme, but with such a large milestone coming up, it’s basically all I’m focused on for the moment!

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The first practice

My dissertation proposal date is fast approaching and I just barely set it! There’s still some work to be done, but today was the first practice presentation in anticipation of the big day. I’m happy to say it went better than expected, but there are a few things I need to change. Since, as usual, we can’t talk about the details of the proposal itself, I can talk about the changes. As an added bonus that’s a broadly applicable thing to talk about, so it may not just benefit me.

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The proposal defense date

Single business person untangling giant rope

Okay not going to lie I had a minor freakout the past few days. One of my committee members wasn’t responding to my emails so I could not schedule my proposal defense. Last night out of the blue, reality smacked me in the face and it occurred to me that next week was the first week I was trying to schedule and time was running out. People are busy and I didn’t want any of the PI’s to have a conflict. But it all worked out…

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The finalized proposal

Well today was kind of a big step, I’ve finalized my proposal, got school-PI’s approval to send it out, and now I’m just waiting for a few people to select their availability so we can schedule the actual defense. I’m just a touch nervous! I still need to modify my slides and of course practice, but we’re now roughly two weeks away from the actual proposal defense!!!

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The proposal edits

We’re just a few short days away from the two week mark to dissertation proposal defense day, maybe, I’m still waiting for responses from three committee members, two of which I speak with on a regular basis, so I’m not too worried about them, one has been ignoring everyone’s emails, so I am slightly anxious to hear back about that one. Since the time is rapidly approaching I need to have both my written proposal and slides figured out, like now.

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Practice makes… less terrible?

I wouldn’t say practice makes perfect, because unless I’m recording something it’s not going to be perfect and even when I record talks/presentations it takes hours longer than anticipated, multiple tries, only comes out somewhat decent, and are not easy to do in general. So I’m opting to think that practice makes presenting slightly less terrible. I enjoy giving talks and sharing science, which is why I’m here writing frankly. But it’s not all off the cuff.

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Not so smooth sailing

Incredible art by: Nunzio Paci check out the rest of his stuff, he’s super talented!

When we last left our exhausted student/medical professional he was anxiously awaiting the meeting that was scheduled for today. It was a rough ~24 hours, but here we are on the other side of the meeting and now there’s a firm(er) plan in place moving forward. So what does that mean for our haphazard student? Well, it could be worse… probably… maybe?

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An ominous meeting

Yesterday after my post I got a phone call (not a text) from surgeon-PI. We discussed his role in my dissertation and the funding we were awarded for my project. There have been some lingering questions about the involvement of the hospital and whether it will be necessary to have a second IRB agreement for my degree. Who knew my decision to take the job at the hospital would make life so difficult?

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Dissertation proposal progress!

After yesterday I wasn’t expecting to write this so soon, but here we are. I’m scheduling my proposal defense. Seriously, I got the email late last night from school-PI and while the proposal still needs some work, it’s close enough that he feels confident in starting the scheduling process now, meaning full speed ahead for me. Honestly I’m a little in shock because things seemed to be moving so slowly that I thought for sure I would be in purgatory for another few weeks minimum, but apparently not!

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Dissertation proposal prep

Well I’ve done it, sort of. I’ve submitted my revised proposal to school-PI and I’m hoping to hear back soon regarding his feedback. In the meantime I’m going to have to start working on the sides for my proposal. I think this is an important step, so today I’m going to discuss the dissertation proposal and what goes into it. Because somehow I can’t find a post where I talked about this… oops.

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The dreaded dissertation timeline

Things are slowly moving forward. I’ve got an IRB approval, I’ve got a proposal mostly written, and I’ve passed along the needed equipment list to school-PI for purchase. Once I finish my proposal modifications, I should be ready to start scheduling my proposal defense. At which point, I should have the greenlight to collect my data and, in a perfect world, graduate soon! But…

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Robots, dissertations, and disappointments

If today wasn’t a whirlwind of emotions I don’t know what was. There were ups, there were downs, there were robots. I think it’s safe to sum up today with the quote, “the best laid plans of mice and men…” which as you may have guessed, didn’t go the way I had expected. It’s not all bad news, but it’s not all good either. Let’s just quit being cryptic and dive into the events of the day.

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The IRB and committee and dissertation proposal, oh my!

Well today has been eventful! After a bunch of emails, meetings, and miscellaneous things, I have a clear shot to my dissertation proposal! I don’t want to say it’s been smooth sailing or that things won’t be rough, but I’m feeling optimistic after all the news. Since there’s a lot, I figure we can cram it into a single post as I take the next few steps to the big proposal defense day.

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PhD Committee struggles

Silhouette row of businessmen sitting in meeting room
Silhouette row of businessmen sitting in meeting room
Hopefully your committee won’t look this creepy.

I formed my PhD committee! Then it fell apart… Then I fixed the problem!! But really I didn’t… A PhD committee is a big deal and you can spend a lot of time trying to find the right professors only to find out that they don’t have the time. In my case, I got lucky and formed my committee without too much headache. Then one person left and the whole thing fell apart. So what goes into a committee anyway and why do you need one?

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The confusing road to my dissertation

I’m very lost at the moment about what the next step would be in my degree. I mean I know what the next step is, my dissertation proposal, the problem is that there’s now a rather large wrench thrown into the mix and I’m not sure what to do. Honestly it would be so much easier to just give up on my degree and go work like I’m doing now, it really would, but after three full years in the program and a decade of schooling to get to that point, I don’t want to stop short. Which means once again I’m faced with an impossible choice and no matter what I decide I feel like someone is going to get hurt.

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Dissertation crossroads

It had to happen sooner or later, I have too many PI’s, and it was bound to cause some chaos in my life. The short version, in case you don’t want the longer one, is that I need to decide if my dissertation project is really the way I want to go about my degree. I have some options for what I want to do for my dissertation and my hospital-PI has offered several alternatives to the original path I was planning. It’s a tempting offer too, I just don’t know which one would be the better option or if there really is a choice here since I’ve technically already committed to the other project.

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The two year countdown

Yesterday was exhausting! In the end though I had a meeting with my school-PI (I think that’s as good a nickname as any) and we discussed what my timeline is and when I see myself graduating. A lot of what we discussed revolved around the funding we just got and the fact that I’ve just taken a new job doing research full-time in a clinical (see: hospital) setting. The talk went well, he’s been supportive of the fact that I took this job and even though it’s caused some friction between school-PI and hospital-PI (formerly main-PI and Co-PI respectively) things are settling down some and I’m hoping to find some minor and probably temporary stability in life.

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The Dissertation Committee

Well it’s been a journey… but every person I emailed has responded and they all agreed to be part of my committee. That’s right, we’re making serious progress on the road to my dissertation proposal. It’s been a little surreal and I’m nervous that even though I’m here I’m not quite ready for it. Today, let’s talk about my next steps and what forming my committee actually means.

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Committee selection

Old black and white photo of blindfolded man in a suit reaching out in front of him.
It feels exactly like this somedays…

Well here’s a post that I thought I wouldn’t be writing this soon. Or maybe I’m right on track and I just don’t want to admit that I’ve made progress. Either way, even though it is the weekend I’m taking an important step in my goal to my PhD! I’ve formally submitted my list for my dissertation committee to my PI. Not a PhD or don’t know what that means? No worries, that’s why I do this, so let’s talk about my committee!

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