We're a little crazy, about science!

Posts tagged “writing

The OR waltz

It’s back to the OR I go! Which means exhausting times ahead, but also very exciting times. It’s been months since our last OR experiment and things have been shelved, literally, equipment has been packed away because we weren’t using it. So it’s time to once again to shake out the equipment and do our familiar dance with the clinical staff.

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The first practice

My dissertation proposal date is fast approaching and I just barely set it! There’s still some work to be done, but today was the first practice presentation in anticipation of the big day. I’m happy to say it went better than expected, but there are a few things I need to change. Since, as usual, we can’t talk about the details of the proposal itself, I can talk about the changes. As an added bonus that’s a broadly applicable thing to talk about, so it may not just benefit me.

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The proposal defense date

Single business person untangling giant rope

Okay not going to lie I had a minor freakout the past few days. One of my committee members wasn’t responding to my emails so I could not schedule my proposal defense. Last night out of the blue, reality smacked me in the face and it occurred to me that next week was the first week I was trying to schedule and time was running out. People are busy and I didn’t want any of the PI’s to have a conflict. But it all worked out…

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New and old projects

It’s finally my chance to put my own spin on the stuff coming out of the hospital lab and I’m incredibly excited about what is coming. Unfortunately I can’t talk about it! However, I’m hopeful that this year will be an excellent year for me with regards to the research I’m doing. Things are slowly falling into place and while we’re still at the beginning, things are looking bright.

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Education and mental health

In the US, roughly 12% of college students report the occurrence of suicide ideation during their first four years in college, with 2.6% percent reporting persistent suicide ideation.

I write about mental health a lot, full disclosure because my mental health is bad on a good day. I’ve found little respite from the depression, PTSD, etc. via pharmacological means or through therapy. I still try, but the results are the same and what’s that saying about crazy meaning trying the same thing and expecting a different result? In any case, there are few things in this world that tests my mental health like education. Because the system is broken and there’s nothing that can be done.

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Slides, robots, and figures. Oh no!

I’m trying to figure out how to incorporate this into robot paper (not serious… semi serious)

Since there’s a mile long list of things I need to get done this weekend, let’s just grab the top three time consuming things and cram them together into one post! When I took on the full-time job while (hopefully) wrapping up my PhD, I didn’t expect for things to be so… busy? Okay, things are always busy, that’s a theme of any PhD journey, but it does feel a bit excessive lately!

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The big rush

A while ago I had an idea, a “big idea,” but the second I had that idea the clock was ticking. Because ideas are not that unique. There is a gap in research and we try to fill that gap when we see it. I noticed a gap and because I noticed it, there’s no reason others won’t notice it as well. Now we’re in an unseen race to publish and there’s still some speed bumps in the way that are causing some issues. I’m hopeful we can get there first, but I wouldn’t be surprised if we had competition.

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The other presentation

With just a few days to work on the project, I was asked to present the data we’ve recently finished collecting at work. The presentation will happen Monday, as in three days away Monday. So between now and then, I need to process the data, make some figures (so many figures), and generally draw some sort of conclusions based on the work.

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The lost children

Can you mourn the loss of something you never had? Imagine for a second you were born without a limb. Can you miss it if you never had it to begin with? I’ve been struggling with this question a lot lately, not because I was born without a limb, but because I was born without a family and in some ways that isn’t too different. Maybe it’s wrong to compare a missing limb to a missing family, but I honestly can’t think of a better way to describe it, because family is an extension of you.

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The finalized proposal

Well today was kind of a big step, I’ve finalized my proposal, got school-PI’s approval to send it out, and now I’m just waiting for a few people to select their availability so we can schedule the actual defense. I’m just a touch nervous! I still need to modify my slides and of course practice, but we’re now roughly two weeks away from the actual proposal defense!!!

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Success! Journal paper 3 of 4

Days turned to weeks, turned to months, turned to years. I was slowly getting to the point that I wanted to give up and I honestly didn’t think this day would ever come. Yesterday night I got the news, robot paper was accepted for publication and I literally cried. I almost have a whole ass PhD and this was my Masters work, but we can now get things ready for actually publishing the damned thing!

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Figure rush

Always with the figure making! Why do we need to make a figure, damn it I’m an engineer not an artist! Yet I’m in a tight spot for the moment because I need to start creating about half a dozen figures showcasing the stuff that we’re doing at work. Oh and I need to make at least one more for the dissertation proposal, not including any additional figures for my slides. It’s going to be a rush job for sure.

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The proposal edits

We’re just a few short days away from the two week mark to dissertation proposal defense day, maybe, I’m still waiting for responses from three committee members, two of which I speak with on a regular basis, so I’m not too worried about them, one has been ignoring everyone’s emails, so I am slightly anxious to hear back about that one. Since the time is rapidly approaching I need to have both my written proposal and slides figured out, like now.

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Practice makes… less terrible?

I wouldn’t say practice makes perfect, because unless I’m recording something it’s not going to be perfect and even when I record talks/presentations it takes hours longer than anticipated, multiple tries, only comes out somewhat decent, and are not easy to do in general. So I’m opting to think that practice makes presenting slightly less terrible. I enjoy giving talks and sharing science, which is why I’m here writing frankly. But it’s not all off the cuff.

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Not so smooth sailing

Incredible art by: Nunzio Paci check out the rest of his stuff, he’s super talented!

When we last left our exhausted student/medical professional he was anxiously awaiting the meeting that was scheduled for today. It was a rough ~24 hours, but here we are on the other side of the meeting and now there’s a firm(er) plan in place moving forward. So what does that mean for our haphazard student? Well, it could be worse… probably… maybe?

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An ominous meeting

Yesterday after my post I got a phone call (not a text) from surgeon-PI. We discussed his role in my dissertation and the funding we were awarded for my project. There have been some lingering questions about the involvement of the hospital and whether it will be necessary to have a second IRB agreement for my degree. Who knew my decision to take the job at the hospital would make life so difficult?

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Dissertation proposal progress!

After yesterday I wasn’t expecting to write this so soon, but here we are. I’m scheduling my proposal defense. Seriously, I got the email late last night from school-PI and while the proposal still needs some work, it’s close enough that he feels confident in starting the scheduling process now, meaning full speed ahead for me. Honestly I’m a little in shock because things seemed to be moving so slowly that I thought for sure I would be in purgatory for another few weeks minimum, but apparently not!

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Dissertation proposal prep

Well I’ve done it, sort of. I’ve submitted my revised proposal to school-PI and I’m hoping to hear back soon regarding his feedback. In the meantime I’m going to have to start working on the sides for my proposal. I think this is an important step, so today I’m going to discuss the dissertation proposal and what goes into it. Because somehow I can’t find a post where I talked about this… oops.

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Committing to the story

For the past few days I’ve been talking about telling a story with your data. Because at the end of the day as a researcher that’s what we do. We do an experiment and, assuming it goes well, we have a story to tell about the result we found and what it means to the people reading the paper. Ideally any good story will have great visuals to add to the story and to help the reader. Which is where I’m still stuck…

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Characterization of interlimb interaction via transcutaneous spinal stimulation

A graphic hospital-PI put together to share our results. I made the figure on the left under the methods heading, which I’m still very proud of.

I was debating about talking about this because I’m “only” the second author on the paper. Apparently I’ve gotten picky now that I have a handful of first author papers in review/published. I’m joking, but seriously, this paper has a special place in my heart and today I want to talk a bit about the science, but also the story behind the paper, because it is an interesting one!

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A busy weekend ahead

This feels a lot like my workstation… Art by: Erlson Neba

As per usual it feels like there’s a lot going on and I’m getting nowhere. It’s an interesting feeling, but I’m sure we’ve all been there. Since there’s a lot of things, I’m once again grouping them into a single post so I have something of substance instead of several very short posts over the span of the next couple of days. What’s going on this weekend you may ask, well just the (hopefully) final version of my dissertation proposal, some data analysis for an experiment we’ve been working on, and a bunch of prep work for all the things happening next week.

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Data visualization dilemma

Data visualization is an important topic to think about. How do you best convey what the data are telling you? It’s something I struggle with because I take it so seriously. Most things can be done simply, the old standby the line graph, box plot, or even scatter plot all work well enough, but more often than not, you want to tell a story and sometimes the obvious plot isn’t the best choice.

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Intellectually curious

I don’t recall what sparked the memory, but I was reminded today of an email I got from school-PI complimenting my new job. He said I was intellectually curious and that struck me as a touch odd because I assume we all are in our own ways. It’s not that I’m not appreciative of the complement, because I am, it’s just that I never understood how we can live in a world full of mysteries and not want to at least glimpse behind the curtain.

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The dreaded dissertation timeline

Things are slowly moving forward. I’ve got an IRB approval, I’ve got a proposal mostly written, and I’ve passed along the needed equipment list to school-PI for purchase. Once I finish my proposal modifications, I should be ready to start scheduling my proposal defense. At which point, I should have the greenlight to collect my data and, in a perfect world, graduate soon! But…

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Robots, dissertations, and disappointments

If today wasn’t a whirlwind of emotions I don’t know what was. There were ups, there were downs, there were robots. I think it’s safe to sum up today with the quote, “the best laid plans of mice and men…” which as you may have guessed, didn’t go the way I had expected. It’s not all bad news, but it’s not all good either. Let’s just quit being cryptic and dive into the events of the day.

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On the shoulders of giants

Tomorrow I’m doing something for the first time, ever. I got an email yesterday with the good news and while we don’t have all the equipment we need for the project, we can still get some good data and an early look at what the data will look like. I’m so excited I’m shaking, I barely slept last night, and my mind is swimming with the possibilities. This is what it’s like doing research on the edge.

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Big claims and big evidence

In science, ideally, when you make a large claim, you need a lot of evidence to support it. In theory anyway, in practice with the speed of the internet, claims often get taken as truth no matter how self correcting later. The claim that vaccines cause autism for example has been thoroughly debunked over and over, but the claim still persists despite the piles of evidence to the contrary. Global warming is another good example of how having a lot of evidence doesn’t mean acceptance.

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The first one

Ever look up an answer in the back of the book? The problem with research is there’s no back of the book, but typically when you do an experiment you can at least glance at research surrounding your work and make sure you’re not going completely off the rails. Because I like to make my life unbelievably difficult, and because I don’t like taking small steps forward, I’m going to (hopefully) be the first to do a few things this year. But it’s not as glamorous as it sounds.

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A town on fire

Section of Route 61 or graffiti highway, nicknamed such because it’s a highway and there’s a lot of graffiti. Sadly a few years ago they covered it with dirt because a lot of the graffiti was obscene.

My brain works in mysterious ways, but did you know there’s a town that’s burning and will probably be burning for another (roughly) few hundred years? Not a town exactly, but it’s yet another case of truth being stranger than fiction. If you’re not familiar with the story, or just like learning more when you can, let me introduce you to the town of Centralia.

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Failing for success

Sometimes I get into a groove and since we’ve been talking about failure, I think it’s time I shared why failure isn’t the end of the story. Failure sucks, let’s be real for a second, it hurts, it’s not fun, and it feels like a very personal attack. Or at least that’s what it feels like to me. When someone rejects something I’ve written or proposed I feel like I’m being told I’m not good enough or that I don’t deserve to be a researcher, imposter syndrome is a bitch. But failure isn’t the end, it’s just somewhere in the middle.

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More on failure

After a rough night of sleep I knew exactly what I wanted to talk about today. Failure. Because like I mentioned yesterday, in my journey to a PhD, there was plenty of it. Part of this was due to the fact that I had no idea what the hell was going on or how to prepare for my PhD, but a big part of this was due to the fact that I held a belief that wasn’t true. I thought, because it’s what we’re told, that when applying to grad school grades aren’t the only thing that matters. And I was lied to.

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The transition to grad school

It’s that time of the year again for anyone who’s applied to grad school. This is roughly the time people get acceptance letters, or if you’re like me a pile of rejection letters, but look at me now MIT! Can you tell I’m bitter? Any sort of life transition is hard, be it high school to college, college to work, or even sleep to awake (or is that just me?), transition can feel downright scary. Well the person I’m mentoring “Kay” is about to take that jump and I can’t lie, I’m super excited for her.

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Self care and health care

Maybe it’s just me, but going to the doctor is exhausting. I think selfcare in general is exhausting and so I’ve basically automated my routine, or maybe created a standard routine it is the correct way to phrase that, to make my life as simple as possible. One thing I can’t do is that with is my health care. I can’t be the only one, so in the spirit of sharing, let’s talk about self care and health care.

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And then DARPA appeared…

DARPA and I go way back. Right after I got out of the military back to be exact. Not that more than one or two people even know my name (and probably only vaguely), but DARPA is the reason I’m where I am today, even if the people who helped me get here don’t remember me. As much as I love the DARPA origin story, that’s all it’s ever been, that is until today, when school-PI let me know that DARPA was paying attention.

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The IRB and committee and dissertation proposal, oh my!

Well today has been eventful! After a bunch of emails, meetings, and miscellaneous things, I have a clear shot to my dissertation proposal! I don’t want to say it’s been smooth sailing or that things won’t be rough, but I’m feeling optimistic after all the news. Since there’s a lot, I figure we can cram it into a single post as I take the next few steps to the big proposal defense day.

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The PhD dissertation proposal

Spinal column shown through a semi-transparent person
Spinal column shown through a semi-transparent person

Well we’ve finally arrived, for real this time, to my proposal timeframe. There are a lot of things that need to happen between now and when I defend my proposal, but thankfully most of those things are started or almost finished. The one thing that isn’t started… well that would be my actual proposal. Be not afraid! I’m going to have the draft done today, or at least that’s what I’m telling myself.

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The final days of the “last paper”

Well I don’t want to get my hopes up, but I have some big news! As promised in the last, last paper update, I wasn’t going to talk about it until we had submitted the paper for review. Well as of today, last paper is FINALLY in review! Now this could be months before we get it actually published and maybe even longer if there is several rounds to the edits, but this is a big step.

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PhD Committee struggles

Silhouette row of businessmen sitting in meeting room
Silhouette row of businessmen sitting in meeting room
Hopefully your committee won’t look this creepy.

I formed my PhD committee! Then it fell apart… Then I fixed the problem!! But really I didn’t… A PhD committee is a big deal and you can spend a lot of time trying to find the right professors only to find out that they don’t have the time. In my case, I got lucky and formed my committee without too much headache. Then one person left and the whole thing fell apart. So what goes into a committee anyway and why do you need one?

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Pardon the dust…

Well today I’ve had a major demolition project going on at home (see yesterday’s post for details), which has left precious little time for anything else, much less blogging. Sorry, but for the day this is it. As a reminder, no matter how big your goal, no matter how far you’ve come, it’s okay to take a break if you need it. My goal was 365 days of academic blogging and well sometimes you need time away. It doesn’t reset the clock, it just makes you human. So take a minute for yourself if you need it, I certainly do!


The hits keep coming

Art by: J.C. Leyendecker from November 21, 1914 issue of The Saturday Evening Post, titled “Beat-up Boy, Football Hero”

You know, if I wasn’t living it I wouldn’t believe it. I honestly question if my coworkers believe it. I have some crap luck. I get the sense that if it weren’t for the photographic evidence of my horrible luck no one would believe me and frankly I wouldn’t blame them. Even with photos, I’m wondering if people are questioning, because how many times can something go wrong with one person?

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Death and depression

Fair warning, today’s post is heavier than usual. There will be discussion about suicide, death, depression, mental health, etc. If you’re not in a good place, this probably isn’t for you. Never fear, there’s help (suicide prevention hotline for one), you’re not alone, despite what it feels like. For everyone else, welcome to my brain once again, but the content is probably not suitable for anyone, including myself.

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For the love of war

Aren’t there enough things trying to kill us? Between global warming, pollution, and the pandemic, I feel like something somewhere wants us gone. Then again, humans are stupid, I include myself in that statement. So here we are talking about something I wasn’t expecting to talk about and that my dear readers is combat.

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The way through

Well new year, new problems. I’m not super surprised I guess given… life. I’m incredibly tired, like mentally and physically exhausted, but we do what we need to in order to move forward. Like I said yesterday, the only way is through, so today is an example of how I try to cope with living. That’s right, time to plan and figure some things out.

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The only way is through

Well I’ve been on a talking about mental health kick lately and I guess that fits with today’s topic. Sometimes in life we find ourselves out numbered, outmaneuvered, outsmarted, and without any real power. It never feels good to find yourself in that kind of situation. I’m proud of how far I’ve come mentally, because if the situation I’m in now had occurred even just a few years ago, I would be checking myself into a hospital for my own safety again. When the weight of the world presses you down so hard you just want to scream, all you can do is push back.

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Time management and mental health

We’re all super busy… right? I don’t think it’s just me, we feel like there’s a mountain of things to do. Then you try to get through the list and when you look away just for a second, suddenly you have twice the work left. This is particularly troublesome for someone like me who has serious mental health issues (along with physical health issues). I want to do all the things, but my mind and body have other plans for me. Somehow I still manage my deadlines and since I was specifically asked to share, we’ll talk about how I do it.

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The death of celebration

Sure, it’s a little early to think about graduation. Even if I finish on time, I still have a little over a year left before it’s my turn. If I don’t finish on time, then it’s anyone’s guess on when I could hope to graduate. Still, it’s something that’s been on my mind lately because I was actually looking forward to celebrating this time.

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The force of will

The body is stronger than the mind. At least that was what the military drilled in me. Your mind will give up well before your body fails. Because being uncomfortable is, well uncomfortable. We don’t like discomfort and we don’t like pushing ourselves outside a limit we’re comfortable with. But constantly pushing yourself past your established limits… that isn’t good either.

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The invisible self

What drives you? Who would you be if the world around you stripped away all the pretenses of how you should act and who you need to be and just let you be you? If it’s a bit too philosophical or overwhelming to think about, then maybe we should all take the time to ask ourselves if we are the people we want to be. Then again, I don’t have the answers, so maybe I’m just as lost as everyone else.

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The road less traveled

“Two roads diverged in a yellow wood…” and that’s twice in almost a year exactly that I’ve started a post off with that line. The title of the poem isn’t the road less traveled, but I’ve decided that for today, that’s the name of the post. I have not had an easy life, some of that was because of birth, but a lot of it was based on the choices I’ve made. While the poem isn’t really about how hard life can be, when I thought of today’s post Frost’s poem popped into my head. Because the road less traveled, fucking hurts.

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The final push of “last paper”

Amid all the chaos that the lab visitor we had yesterday caused I wouldn’t blame the causal reader if you thought that the robot project was my only focus. Hospital-PI summed it up best when he said we’re all working on roughly four projects at any given time and I responded with, “you guys are only working on four?” Don’t get me wrong, I like it this way.

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