Back in the OR!
Well we finally got approval to head back to the OR. We were having some issues with our sample size, as in we hit the max for our protocol, but after a little bit of work we’re going back! The good news is that this doesn’t just affect the project I’m working on, this means I can move forward with the other project I’ve been dying to start.
(more…)The final push of “last paper”
Amid all the chaos that the lab visitor we had yesterday caused I wouldn’t blame the causal reader if you thought that the robot project was my only focus. Hospital-PI summed it up best when he said we’re all working on roughly four projects at any given time and I responded with, “you guys are only working on four?” Don’t get me wrong, I like it this way.
(more…)Visitor to the lab
Today was the day! Luckily I somehow managed to get the robot assembled and working properly… mostly. I’ll get to that. We got to showcase some of the stuff we did in the lab, I got to explain “big idea” to yet another person who may be interested in helping fund the project (since technically I’m running on a budget of funding scraps), and overall I think it was well received.
(more…)Another robot appears!
In the middle of the week we’re expecting some visitors that could lead to funding for our lab! Not that we need more projects, we already have over a dozen different projects we’re trying to power through and only three of us (including hospital-PI) to get them all done. Since we have so many projects, we’ve split them in half, literally. I’m taking all the lower limb projects and my labmate is taking upper limb. What does this have to do with the visit? It turns out, a lot.
(more…)Return of the “technique”
With all the excitement around here with the progress made towards making “big idea” a reality, you may think that I’ve forgotten about other projects and things I’m working on. That isn’t the case and I have other exciting updates regarding something I’ve been calling my “super secret technique” not the most descriptive name, but that’s sort of the point. It’s not “big idea,” but is sure isn’t a tiny idea either.
(more…)The big pitch
Today was the day we pitched a proposal to two of the doctors that can help make my “big idea” a reality. It did not go anything like I planned, some of what happened was funny, some of it was horrific, but mostly it went how it needed to go. Things never go as you plan them, but this was just completely off the rails.
(more…)A big meeting
Well I’m excited, tired but excited. It’s been a long week and that is partly because I have a meeting tomorrow to discuss a project that will be a big help in my PhD, but also a really cool project in general. We also have a second big meeting next week with some guests coming to see the research side of the hospital, so yeah busy!
(more…)The last paper updates
Well things are moving fast. So fast I haven’t had a break. Since I have a free moment, and I really do mean moment, we might as well go for the low hanging fruit and update on the “last” paper. This paper has been in the works for years (literally years) now and we’re finally coming to a close in the chapter. At least that’s how it appears. There’s still some rough sailing ahead, but I think we’ve finally made it…. maybe.
(more…)PhD topic or, don’t worry it’s only your life
We ask a lot of kids, I say kids, but I guess more accurately I mean teenagers. The pipeline (here in the US anyway) is high school then, if you’re lucky enough, college. The pipeline assumes you have a clear idea at 18 what you want to be doing until retirement, which in the US is ~65 again, if you’re lucky. While in college you get a short four years, on average, to figure it out and do the work to get the degree you desire. Then you’re forced into another choice, work or more education? I don’t know about the former, but I do know about the latter choice.
(more…)A surprise 3D modeling project
Since I have a policy of brutal honesty around here, I’m not going to lie, it’s been a minute since I seriously did any solid modeling work. I think the last time I tried in earnest to do any sort of solid modeling was for the class I taught… two years ago? So yeah, today will be fun, right we’re using the term fun. I’m okay with lying to myself.
(more…)The last paper
Kind of a misnomer since this is definitely not THE last paper, but it’s paper four of four. The fourth paper in my roadblock of papers where things were coming in, but for whatever reason nothing was moving forward. Now with two of the four published and one in review again after a request for edits, I’m assuming it will be accepted (sooooon!). That leaves me with exactly one paper left and there are finally updates.
(more…)The research struggle
Working in a research hospital is awesome. Things are streamlined that aren’t in academia and this was probably most apparent when I first started doing research in that setting almost three years ago exactly now. There is still a lot of red tape and things that need to be approved, ethical research is important in both academic and clinical research, it’s just handled by others instead of it all being your job. That doesn’t mean clinical research is all sunshine and rainbows though.
(more…)Old student, new tricks
With a little luck, I’m a year away from graduating. It’s been one hell of a journey and I really hope I hit this goal. Still, I keep thinking what’s next and the truth is the future looks a lot like the present. It’s not just because I’m now working at a research hospital, that helps, but what I mean is that the difference between being a student and being a researcher isn’t all that different. You have to learn new skills.
(more…)The robot resubmission
Sometimes life comes at you fast, other times you’re writing a paper and four years later you’re still looking to publish it. Publishing can be like that and while I’m not the only one with this type of story, I do believe we’re finally coming to an end of the robot paper saga. I’m really hoping I don’t have a whole ass PhD before this thing gets published, that would just be awkward.
(more…)Robot rush
Well we’re just a few days away from robot paper deadline and there’s still some work to be done! While robot-PI is still editing the paper, I had an unfortunate realization with some of the work I had done that requires me to go in and fix a few things. So once again, I’m doing things as hard as possible.
(more…)The week ahead
Every once and awhile I like to highlight what kind of stuff I’m working on during the week and since there are a lot of things going on and none of them would make a very “full” post on their own, I think it would be best to group it all together and look ahead because there are some very interesting things happening this week!
(more…)Weekend work
Weekends are historically the time where I get the bulk of the work that seems to pile up during the week done. This weekend is no different and since there’s plenty to keep me busy, I am once again distracting myself by writing. Mostly because I feel like talking about what I need to do helps me figure out the best order of things to get done. Maybe it helps, maybe it doesn’t, but I like my little system.
(more…)Oh the things you’ll learn
I’ve been a student for some time now, roughly 15 years since undergrad (not counting “traditional” schooling growing up. Over these years there were several instances, really I would consider them setbacks, where I just didn’t know what I didn’t know. Hindsight is 20/20, but the exception for me has always been seeing personal growth.
(more…)The work ahead
There’s work to be done and as usual when things pile up like this, I like to discuss (as much as I can) the things I’m up to. Mostly as a (semi) sanity check. I want to make sure that when I write out the stuff I’m doing or the order I’m working in that it makes sense to do it in that way. So what’s in the need to do pile today? Lots of stuff, ranging from data analysis to paper writing. The work never seems to be finished.
(more…)People are squishy and other science explanations
A recent blog comment reminded me of something I said the other day to surgeon-PI. Keep in mind that surgeon-PI and I have only known each other since he started at the hospital, which isn’t long. While we were doing an experiment in the OR, so under his watch, we discussed some of the challenges with the experiments we were doing and when we tried to change things on the fly he said it was bad science, to which I replied people are squishy. I said what I said damn it!
(more…)The robot paper response
Yesterday due partly to the house work I was having done, I got none of the data processed I needed to do, but I had a chance to address some of the comments I got from the reviewers on “robot paper.” The response is due in just a few days and one reviewer was very thorough with their feedback, so there’s a lot to address and not a lot of time to get it done. The good news is ~94% of the comments are addressed, the only bad news is that it isn’t 100%.
(more…)The edge of panic
I’ve got a lot going on at the moment and the more I seem to get done the more I have to do. By Monday I need to have work done that would take me about twice as long to do. If it’s one thing this blog project has taught me, it’s that I’m always one missed deadline from catastrophe. Or at least that’s the way it feels inside my brain and I do not enjoy it!
(more…)The IRB response
That was fast. I wasn’t expecting to hear anything back from the IRB so quickly, but here we are and I have a bit of work to do. Technically we didn’t get the IRB reviewed yet, it’s only been “pre-reviewed,” but pre-review helps speed things up when the IRB meet next (in about a month) to look over the application. Since we were asked to make some modifications, this should help bring our IRB application up to standard before the IRB actually review it.
(more…)The dissertation proposal timeline
Now we wait… There’s a lot of things up in the air at the moment, but right now school-PI is reviewing my proposed plan for my dissertation and the timeline I gave to get it all done. There’s a lot of “ifs” involved with this and I’m not sure what constitutes as “enough” for a PhD. Thankfully I know the funding I was awarded is more than I need to do so I have an extreme upper limit to the work (or what I hope is an extreme upper limit).
(more…)Chaos as enjoyment
Well today’s post comes far later than I would’ve liked, but hey it’s been a day. What kind of day? Well surprise, surprise I cannot talk about it! That’s the theme, I get to hint at stuff for a year or so and then surprise everyone with the paper after the fact. But today did inspire something that I can talk about and that’s why today we’re talking about why I love research so much!
(more…)Back to back OR experiments
I’ve had one other instance where we had two OR experiments in a single day and that was exhausting. Thankfully we had a break in the middle so that I could get everything cleaned and prepped for the next time. Unfortunately I’ve just been made aware that next week we get to try things on hard mode next week.
(more…)Back in the OR
Oh man, I haven’t been in the OR since last year! Okay we’re only a few days into the new year, but it does feel like it’s been a bit with the holidays. That’s going to change though because tomorrow is our first OR experiment of the year. And with the new year, we have some new changes to the experiment that we’ll be trying since we’ve had over a half dozen attempts to do this right with somewhat mixed success.
(more…)Breadth of knowledge, or the things they don’t teach you
As of yesterday I’ve started turning my latest idea into a reality. While I was working I realized that I have a large skillset and most of it wasn’t obtained through the traditional school route, but almost all of it has helped me become a better student and researcher. While there are plenty of things I wish the school required for a researcher, for those of you starting out it’s not too late to think about what seemingly disconnected fields may help you do your science better.
(more…)The first steps to my proposal
I said this year was going to be a ride and I meant it. We’re four days into the new year and I’ve just heard back from school-PI that I’m good to submit my IRB. Since that may sound like gibberish to the non-academic and because I like to make things accessible, today I’ll explain what an IRB is, why it’s important, and why having one is somewhere between a small step and a giant leap to my PhD.
(more…)Goals for 2022
Last year I did a post like this and I figure it was fun, so I’m going to try yet again to predict what this year will look like for me. Sure, they are the things I would like to happen, but as I found out last year what I think will happen and what does happen, are two different things. So the plan is simple, list a few things I want to get done this year and why, then laugh next year as I either fail miserably, go off on some new and seemingly unrelated tangent, or do far more than I imagined. It will be an interesting year no matter what the outcome though.
(more…)2021 in review
Last year I did “a year in review” and yesterday, feeling a bit curious on seeing what I had accomplished the year before last (2020), I went back and read it. Obviously the last year has been… interesting to say the least. We’ve collectively been through some shit, but that doesn’t mean nothing good happened so for a moment at least I want to catalog some of the good stuff that happened last year. So next year, I can do the same look back and see what my goals were and what was actually accomplished.
(more…)New year, new experiments
We are an alarming number of days away from the new year. Where did this year go? Why did it suck so bad? Why was this possibly the best year we will see in our lifetimes? Why am I asking so many damned questions? Am I having an existential crisis now that the year is coming to an end? That was a legit question and not part of the running gag. I’m a man who likes his plans, so let’s look at what (I hope) is instore for next year.
(more…)Another OR experiment
Time to dust off my scrubs, it’s back to work for me. In fact, I have been so busy with other things I don’t think I mentioned it, but today is yet another OR experiment. With how well the previous two went, I’m hopeful that this one will go well, but a somewhat alarming email from hospital-PI yesterday may throw a wrench into any plans I had.
(more…)OR experiments, the aftermath
The good news is we have data! Lots of data, more data than you could shake a stick at, although I don’t know why you would shake a stick at anything… That’s beside the point(ed stick) though! Yesterday was not one, but two OR experiments and I have to say surgeon-PI must be in way better shape than he appears because both hospital-PI and I are exhausted!
(more…)Interrogation of spinal networks during movement preparation using transcutaneous spinal stimulation
That’s not the name of the paper, but that’s the general idea. We tend to take movement for granted, I mean most of the time we do it without thinking. I don’t look down as I’m typing these words, yet my fingers know what to do to make it happen. Similarly, we don’t really think about balancing ourselves when we walk, we just do it. So if I’m not consciously thinking about every step I take when I walk down the street, who, or what is keeping me going?
(more…)Yet another rush…
It’s a familiar story by now. Tomorrow is not one, but two experiments in the OR. In fact, I’m going to be so busy tomorrow that I’m probably going to write tomorrow’s post today. The good (or at least interesting) news there is that I have a good topic lined up for tomorrow since it just happened to fall in my lap. But for today, well let’s just say there’s not a whole lot of time.
(more…)End of the year blues
As the year wraps up, I still feel like there’s quite a bit of work left for me to accomplish. Now to be fair, year end isn’t some magical barrier, but it is a good way to mark the passage of time and I’ve had the opportunity to do some amazing things this year, so I’m not complaining. Still, with all the accomplishments I’ve had, and there were several, why do I feel like I have so much left to do?
(more…)Double OR experiments!
It’s official, I just got not one, but two new participants for our study. This will be happening next week and the scary part is they are both on the same day, so it will be more than a full day in the OR, like 12 hours or so for the whole day. Not all of that time will be spent in the OR, thankfully. Every attempt we’ve had thus far in the OR has gotten better and better, so if the pattern holds, we should have some very good data after this next round of participants and I will have more data than I know what to do with.
(more…)The fifth OR experiment
Well we did it. I finally have the first (mostly) complete dataset from a patient. Overall I think it went well and we got good data. Mistakes were made! But thankfully none of them derailed the project and overall I am happy with the outcome. Let’s get into what went wrong and what went right, because having some post surgical notes will help me next time we do our thing.
(more…)Prepping for the experiment
Today’s the day, experiment number five. With lot of luck this will be the first full experiment we do for this protocol. It will hopefully mark a turning point for us since after four attempts we’ve yet to get a full dataset. However, I’m hopeful, but I’m also going in alone today.
(more…)Solo OR experiment
Tomorrow will mark attempt number six to get the data we’re after from the OR. We’ve got a very unwieldy experiment to do which involves coordinating with the surgeon, but also the staff to make sure we don’t run into each other. It’s a delicate dance and if you haven’t been following along, it hasn’t been great so far.
(more…)A big idea…
You ever have an idea that you just KNEW would change the way you were doing things. Like the first person to invent a surgical robot, it was just a good idea and it completely changed the way things were done. I don’t think that this idea is going to change things that dramatically, but much like my super secret technique, I think my recent revelation is going to mean some great things for me. Lighting struck the other day and it has hospital-PI incredibly excited.
(more…)Journal Paper three update!
Well that was fast, we got reviews back on a paper we recently submitted and they were surprisingly good for us. It’s still considered major revisions, but they gave us ten days to make the changes. Ten days as of Monday, so were about a week away from needing to resubmit. There’s some work to be done for sure, but I think we can manage.
(more…)Fun with collaborators!
So much has been going on that I can’t even keep up with it. I was debating about what news to share, but I think we’ll talk about something I’ve had in the works for awhile now. Actually I just checked my email exchanges, this has been in the works for over a year and today we finally crossed the threshold from hypothetical to real world data collection!
(more…)Update from the OR
No, I’m not updating this while I’m in the OR, but we had OR attempt number five as a maybe today and I have good news. We managed to get a yes at the last minute and got some interesting data. It’s all very exciting, so now I need to dig around and see what we found. For sake of remembering, let’s run through how today went!
(more…)Another OR experiment… maybe
I got a random email yesterday from hospital-PI that I didn’t understand and I’m still trying to figure out what’s going on, but it looks like experiment number five may be happening as early as Monday! It will be an early morning and a long day, but it will be worth it, assuming it happens. Like everything in my life at the moment, we’re not 100% sure that we will be able to attend.
(more…)The BIG result
Today I had my meeting with school-PI and I have to say it went both better and worse than I was hoping for. The good news is I’m still a member of his lab and he seemed surprisingly okay with me switching projects for my dissertation, not that the project would change much, just the funding source. Of course that doesn’t mean it was all sunshine and rainbows, because that would be too easy.
(more…)The BIG meeting
I am a simple man. I keep my life as simple as possible because some days I can barely get out of bed. Breakfast and lunch have been the same things for years and I’m okay with that, in fact dare I say, I look forward to it? I keep my hair cut short so I don’t have to even think about it and besides the things I need like money to live, I don’t go out of my way to complicate things. Aside from my education and the things related, I have very little that I NEED to do, so I can focus on surviving the day. It’s a good system.
(more…)To catch an error
Well it’s been an adventure! First we collected some one of a kind OR data, then because of technical difficulties couldn’t get it to open. The support team for the software has been amazingly responsive and we were able to recover the file! Or so we thought, saving the file caused the error to reoccur, so we needed more help. Thankfully because we could open the file, I could debug and now I look like a data wizard. So this is the story of how I attacked and dethroned the data gods.
(more…)The last experiment
Goodbyes are hard, even if you don’t really know someone outside of work. Today we’re saying goodbye to a few of our participants as they finish one of our longer experiments. It feels like only yesterday, but it’s been several months now so it’s time to wrap things up. The good news is this will create a bit of an opening in my routine, but that’s probably going to be filled in pretty quickly.
(more…)
Lunatic Laboratories 